The phrase "algal genomes using" is correct and usable in written English.
It can be used in scientific or research contexts when discussing methods or techniques applied to algal genomes.
Example: "We are analyzing algal genomes using advanced sequencing technologies."
Alternatives: "algal genomes with" or "algal genomes through".
It is worth noting that 40 60 % of the homologous ESTs between B. braunii 779 and other B race strains are known sequences (or having best-hit in the 6 algal genomes used in this study).
However, repeating the searches of all genomes using all algal MIPs discovered in the first round of searches as queries revealed two more MIP sequences, whereof one was from this species (OtMIPC1 1), resulting in a total of 22 algae MIPs, see Table 1.
Thus, a system may exist which produces several different viral genomes using one or a few copies as template and integrated in the algal genome.
Searches of the algal genomes were carried out using the Department of Energy (DoE) Joint Genome Institute (JGI) database (http://genome.jgi.doe.gov) using the latest releases as of April 2014 of the dataset created with 'all models' gene prediction algorithms.
To investigate pseudogenes in green algal genomes, we identified them using a modified pipeline [ 18].
To undertake an evolutionary analysis of Su var)3-9 SET genes in land plants, three other completely sequencing plant genomes and one algal genome were searched using multiple representatives of Su var)3-9 SET proteins in Arabidopsis thaliana as queries.
It is particularly problematic that only the highly reduced and unusual red algal genomes currently available were used for complete genome-level analyses.
To further test this hypothesis, an extensive search for proteins of chlamydial origin was performed using several recently sequenced algal genomes and EST databases, and the proteins subjected to phylogenetic analyses.
Using 35 plant and 6 green algal genomes from Phytozome v9, we clustered 1,291,670 peptide sequences into 49,355 homologous gene families in terms of sequence similarity.
Nine algal genomes available at the Joint Genome Initiative JGII) [ 14] were searched for encoded MIPs using protein sequences from Physcomitrella patens and Chlamydomonas rheinhardtii as queries [ 9, 15].
