Sentence examples for after microarray data from inspiring English sources
After microarray data normalization, Principal Component Analysis was performed on the average gene expression profiles of the experimental groups.
For example, the identification of regulatory motifs which can be used to predict regulons, commonly adopted after microarray data collection, uses a set of co-regulated genes as a prerequisite [c.f. [ 25, 26]].
After overlaying microarray data from human chondrosarcoma, 204 upregulated and 106 downregulated genes were identified as Hh-responsive Gli binding targets.
After stringent microarray data filtering (Supplementary Information S1), 572 of the initial ∼20,000 transcripts on the array remained as input for further analysis (Supplementary Information S1).
Figure 5 shows the computational time (in CPU seconds using a AMD Opteron 248 2.2 GHz processor, after the microarray data was read) required to reconstruct networks of different size, ranging from five to 25 genes sampled at random from the circadian rhythm (CR) and adherens junction (AJ) microarray data sets.
After microarray raw data acquisition, data processing was performed using the web-accessible Micro Array Data Suites of Computed Analysis, MADSCAN resource (at [ 105]; [ 106]).
After pre-processing microarray data with R packages Limma and vsn, and after removing control probes and the probes that were detected in less than 4 of 8 microarrays, 34049 probes were retained for further analysis.
After analyzing the microarray data by MetaCore™ algorithm, a total of 12 regulatory pathways were found to be associated with invasive phenotype (p < 0.001).
In this study, after averaging miRNA microarray data between two replicates, we ranked miRNAs according to their signal intensities.
After preprocessing the microarray data, the LIMMA package was used to screen the DEGs.
After scanning, the microarray data were normalized using quantile normalization in the R language environment (version 2.8.1, available at http://www.r-project.org/).org/
