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Both admixture models (present/absent) were employed, allele frequencies were assumed to be independent, and sample origin information was disregarded.
We demonstrated that female and male X-chromosomal admixtures have different expectations under mechanistic admixture models.
The results of the spatially explicit analysis conducted in tess were very similar for the two admixture models used.
One question that arises when applying admixture models in practice is how to select the model complexity, or number of populations, K.
We treated individual samples as haploid and explored both admixture and no admixture models and models with correlated and uncorrelated allele frequencies with K = 2 − 10 clusters.
Plots of DIC values (Y-axis) against K max (X-axis) obtained for tess analysis (Chen et al. 2007) under two admixture models (car and bym).
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Population structure was further investigated with STRUCTURE v. 2.3.364 using the admixture model and correlated frequencies.
The analysis was based on the Admixture model with burn-in set to 100,000 followed by 500,000 MCMC replicates.
STRUCTURE was run in the admixture model and repeated ten times per k with a burn-in of 50,000 iterations followed by 50,000 MCMC iterations.
Ni, X. et al. Length distribution of ancestral tracks under a general admixture model and its applications in population history inference.
The admixture model (Hubisz et al. 2009) was selected in the Bayesian clustering analysis.
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