Sentence examples for adjusted matrices from inspiring English sources
As standard matrices are not suited to compare proteins with biased amino acid compositions [ 22], recently novel series of adjusted matrices have been constructed specifically for Plasmodium proteins [ 23- 25].
In the present study, we assess the performance of these matrices with that of compositionally adjusted matrices (sensitive PSI-BLAST searches) in terms of detection of the true and false positives, an important aspect missing in our earlier studies [ 9, 10].
Therefore, the compositionally adjusted matrix is necessarily the same for each HSP in a window and need only be computed once.
Fly ash is used not only to modify the workability of fresh mixtures, but also to adjust matrix strength to the values favourable for producing SHCC materials.
We use the whole DWT-DCT coefficients rather than a certain part of coefficients to adjust matrix dimension.
In this paper, we propose a new matrix called adjusted adjacency matrix that meets this requirement.
The number of false positive hits increases steeply for BL62adj (compositionally adjusted BLOSUM62 matrix) while the other matrices show a less dramatic increase and thus show better performance, particularly apicomplexan specific matrix SMAT80.
The adjusted data matrices were then imported into AIoutput2 ver.1.29 [ 31] for automated RI-based compound identification and quantification.
The subject data are filtered before compositionally adjusted scoring matrices are computed, and occurrences of the X character are ignored when computing the composition of a sequence.
A unique dataset of all P. berghei and P. yoelii proteins with an assigned gene ontology was constructed and all P. berghei vs. all P. yoelii BLAST searches were carried out using BLOSUM62, BLOSUM90, SMAT80 and compositionally adjusted (BL62adj) matrices.
So, although in theory this adjustment of G VR improves the properties of the G matrix [ 37], in our case the adjusted G matrix was very close to the original matrix and is therefore expected to yield very similar predictions.
