In particular, the model considers only ζ, β and γ DSs, interacting through two coupling constants corresponding to sequential and adjacent interactions, plus two global external fields to constrain the magnetizations.
Two adjacent interactions are considered to be cooperative and can thus occur simultaneously if their common partner protein has overlapping time-ranges for these two interactions.
Jin et al. [ 18] exploited the time-series of gene expression profiles to determine whether two adjacent interactions are exclusive or cooperative.
Two adjacent interactions (those with a common protein) may be mutually exclusive [ 73, 74] due to the overlapping binding interfaces on the common protein.
We should also mention that these TDDFT calculations were performed in vacuo and do not take into account the effect of neighboring interactions between adjacent spiropyran polymer chains.
These results highlight the importance of adjacent pore interactions either neglected or not directly taken into account in the classical micromechanics models, nor easily captured by numerical techniques.
The elastic medium is simulated as Winkler Pasternak foundation, and adjacent layers interactions are assumed to have been coupled by van der Walls (vdW) force evaluated based on the Lennard Jones model.
In the following, we will mainly use the duplication subgraph framework, as it gives a simple view of correlations between adjacent duplicated interactions, useful for modeling the process.
