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Neighbor table is a conceptual data structure for formation of a cluster whereas Cluster Adjacency Table (CAT) is used for keeping information about the adjacent clusters.
Cluster Adjacency Table.
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The performance includes conversion to an adjacency list representation (Table 2).
Times measured for the RingSearch include the conversion from the CDK objects to an adjacency list representation (Table 2).
A common form for the latter is called a sociomatrix or adjacency matrix (see Table 2); another is as an edgelist, a two-column matrix with each row identifying a pair of nodes in a relationship.
In the second step genomes are translated into adjacency matrices exploiting tables of gene coordinates.
Furthermore, the upload of user-defined networks, in form of tables or adjacency matrices, is supported.
Instead, the graph is specified by Table 1; an adjacency list representation.
After translation of the ARACNe output adjacency files into Cytoscape compatible tables, we obtained the corresponding TFs-only (TFsNet; Additional file 2) and complete (FullNet; Additional file 3) databases.
The efficiency of topological descriptors to estimate PL (r ranges from 0.515 to 0.804; Table S6) showed that adjacency and distance in chemical graphs, being general descriptors of molecular size, shape, and branching, are important in predicting this parameter.
The performance includes conversion to an adjacency list representation for the new method (Table 2).
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