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An additional extant species, Oculina patagonica, occurs in the waters of the Mediterranean Sea [ 24, 25].
Our estimate of the time of introgression may be biased somewhat if additional extant lineages were not sampled, or if there have been extinction events.
The two matrices are the same for the fossil species, but they are different in three additional extant taxa in Table 3.
Of the competing explanations, only the "semicristata" scheme would predict these three allopolyploids' placement in a clade with no additional, extant diploids.
It is also important to note that, because the vertebrate genomes we considered are in various stages of draft sequencing, assembly, and annotation, we cannot exclude that the present survey missed additional extant NAT sequences.
By the late Miocene, three additional extant lineages in the genus had diverged: the Western Mediterranean and Macaronesian clades, and the lineage formed by the single species Ch. uliginosus, a rare herbaceous member of the genus.
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Additional analyses and extant literature supports our hypotheses that multiple risk factors contribute to the phenomenon, including (a) hazard exposure, (b) organization of work, (c) physical fragility, and (d) normative cognitive, sensory, and psychomotor changes that occur with age.
In addition, model-averaged estimates for parameters from the analysis excluding extant taxa (Additional file 1: Table S6) are given.
All were included in this study to reflect the extant population (Additional files 1 and 2).
Additional analyses suggest that extant introns in yeast are not merely genomic relics but that introns tend to be actively maintained in natural populations of S. cerevisiae.
Samples of A. acuta represent all geographic regions from which this species is known, and include most extant populations (Additional file 1).
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