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In order to minimize false SV calls supported by the assembly, the assembled contigs were aligned to the reference human genome using an additional alignment algorithm SSAHA2 [ 34], and the SVs again validated using R-SAP.
CoMFA models generated from additional alignment rules, which were guided by co-crystal structure ligand orientations, did not improve the correlative value of the model.
Additional sequences were selected in the database and exported to the sequence alignment program Bioedit [46] for additional alignment editing.
Additional alignment algorithms were used to define transcript-specific probe sets employing different databases as RefSeq or AceView [6], [7].
We could not further increase stretch frequency with our system to test the prediction that 1 Hz is a saturation level of stretch frequency above which no additional alignment is expected.
Several annotated sequences were then used for an additional alignment to check for conservation of H104.
Similar(42)
These additional alignments would contain information about paralogous conserved syntenic regions.
Additional alignments and reverse BLAST experiments were performed to verify relationships as appropriate.
As we reduce the similarity to 70%, RINQ returns additional alignments from the chemokine signaling pathway.
If suboptimal alignments are desired by the user, the program proceeds to find additional alignments beyond the optimal score level.
Two additional alignments were constructed to explore the sensitivity of the phylogenetic results to alternative alignment parameter values.
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CEO of Professional Science Editing for Scientists @ prosciediting.com