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Potentially active elements were identified "in silico" through the presence of ORFs with protein domains that are typically required for transposition and conservation of LTRs for class I elements and TIRs for class II elements.
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Candidates were tested in vitro and in vivo and several elements were identified as active transcriptional enhancers.
Upon analysis of the genes encoding proteins related to transposition, only three LTR-Copia elements were identified as being potentially active in the genome.
Four critical elements were identified: 1.
No other described regulatory elements were identified.
Repeat elements were identified by RepeatMasker [ 80].
Repeat elements were identified using RepeatMasker2.
83,294 potential non-coding elements were identified.
Multiple putative cis-acting elements were identified.
Both complete and incomplete elements were identified.
Tic101, a member of hAT (Ac/ Ds) elements, was identified as an autonomous TE encoding an active transposase protein.
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