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Except for our Adjusted Haplotype Conditional Entropy (H|H), all of the values in the formulas for Table 2 are taken from the 1,000 Genomes Selection Browser[ 26], and converted to a sum of logs (P value when reported, but MAF is similarly transformed although it is not a p-value) across thousand genomes populations on a per-SNP basis.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com