Sentence examples for across all assemblies from inspiring English sources

We observed a SAGE tag on average every 6,003 bp with 5,407 6,788 bp between SAGE tags across all assemblies.

Three fish assemblies (CSHL, CSHL*, and SOAP*) were all found to contain the most core genes (436 out of 458 CEGs), but 455 CEGs were present across all assemblies.

In order to cluster the homeologous and homologous sequences across all three assemblies, the identity parameter of this combined Nicotiana assembly was set to the lower stringency level of 95%.

We visualized the performance of all assemblies across all key metrics by means of a heat-map (Additional file 2: Figure S16) and a parallel coordinate mosaic plot.

Cuffmerge maximizes assembly quality by removing transcripts that are artifacts and merging novel isoforms with known isoforms across all Cufflinks assemblies.

This general pattern, evident across all 24 assemblies, is particularly pronounced in the species more distantly related to those included in the probe design (Figs. 1 and 2).

Across all SSPACE assemblies only 1 1.8% of the MP read pairs satisfied the perfect match, read orientation, and insert size criteria (Table  3).

To provide consistency in gene predictions across all three assemblies, we implemented the bacterial gene prediction program fgenesb (Tyson et al. 2004), using the "generic BACTERIAL" model.

While their assembly only comprises ~10% of the estimated genome size for the snake, it contains almost three-quarters (332 out of 438) of the core eukaryotic genes that are present across all snake assemblies (see Additional file 4).

The fish assemblies tended to be the lowest quality of the three species with the REAPR analysis suggesting that only 68% of the bases across all competitive fish assemblies are error free compared to 73%and75%5% of the bird and snake assemblies (Additional file 4).

Roughly 82% of bases, across all of the assemblies, have quality scores ≥45 (the highest category considered in our analysis; see Materials and Methods), and only ∼4% have scores <20 (Figure 2).