Sentence examples for acid sequences were simulated using the from inspiring English sources

Amino acid sequences were simulated using the empirical JTT model.

As expected because sequences were simulated using an MBL model, the covarion model is never favored.

The aggressive acid environmental conditions were simulated using the following acids: 5 % sulfuric acid (H2SO4), 10%% hydrochloric acid (HCl), 5 % nitric acid (HNO3) and 10%% acetic acid (CH3COOH) of pH equal to 0.5, 0.25, 0.45 and 2.2, respectively.

Amino acid sequences were simulated under Whelan and Goldman (WAG) with four categories of Γ-distributed rates across sites.

Spatial coordinates were simulated using Gaussian distributions.

Missing data were simulated using multiple imputation.

Also, both amino acid and DNA sequences were simulated on the FUNYBASE chronogram (see below).

Nucleotide sequences were simulated on the phylogenetic trees using Seq-Gen 1.3.2 [ 83].

Of the 5000 data-sets (each 21 sequences, 143 amino acids in length) simulated using the conservative mtREV24 model of substitution, only 2.3% had 11 or greater constant amino acid positions.

The nucleotide sequences obtained and the deduced amino acid sequences were analyzed using bioinformatics tools.

The amino acid sequences were aligned using MUSCLE [ 34].