Sentence examples for acid sequences were made using the from inspiring English sources

Multiple sequence alignments of deduced amino acid sequences were made using the ClustalW multiple-alignment software (http://www.ebi.ac.uk/clustalw/index.html).html

Multiple sequence alignments of the deduced amino acid sequences were made using Multiple Alignment software (http://www.ebi.ac.uk/clustalw/index.html) [47].

Multiple alignments of amino acid sequences were made using ClustalW and adjusted manually.

Comparisons of bas-1/C05D2.4 and other pyridoxal-phosphate dependent decarboxylase amino acid sequences were made using "BLAST 2 Sequences" [version 2.2.6, [73]; Settings (largely default): Matrix – BLOSUM62, Open gap penalty – 11, extension gap penalty – 1, low complexity filtering – OFF).

In-frame DNA alignments of the gene sequences were made using the translated amino-acid sequence using BioEdit 7.0.9.0 [ 83] and ClustalW [ 84] and adjusted by eye.

Comparisons of the nucleotide sequences were made using BlastN [44].

Alignments of Rsp sequences were made using BWA-SW [ 67].

Nucleotide and deduced amino acid sequence comparisons were made using the BLAST algorithm.

Alignments of N- and C-terminal amino acid sequences were made separately using default parameters in ClustalW (MacVector™).

Alignments of amino acid sequences for each quadruplet were made using ClustalW [ 36] and reverse transcribed to obtain alignments of DNA sequences.

The sequencing reactions were made using ABI PRISM Big Dye Terminator Cycle Sequencing Ready Reaction Kit Applied Biosystemss) according to protocols.