Sentence examples for accumulation of read from inspiring English sources

A TSS was assumed to be false-positive if no clear accumulation of read starts is observed at the particular position and the found TSS is detected within an uneven gradient of accumulated reads.

Each base within a TC is overlayed by the number of reads that include the base (adjusted number of reads for multi-mapping tags), and the maximum accumulation of read numbers within a given TC is defined as the tag-depth for the TC (Fig. 1).

A putative TSS was assumed to be false-positive and disregarded if no clear accumulation of read starts was observed at the particular genomic position and additionally the putative TSS was detected within an uneven gradient of accumulated read starts.

The remarkable accumulation of reads in the expected sub-500 bps region is clearly visible.

Genes with the lowest AUC values exhibited an accumulation of reads near their 3′ ends, which may reflect regulation at the level of transcription termination.

We noticed an accumulation of reads 5' to exon 116 (ENSDART00000109099109099) in zebrafish skeletal muscle and in the corresponding exon of mouse heart (e223, ENSMUST00000099981, Figure 4A).

These mRNA fragments were then coalesced into 'footprints' by the locally strongest accumulation of reads, yielding 472,474 footprints, or sites of RISC occupancy in mRNAs.

(A ) RNA-Seq data from 72 hpf zebrafish trunk (left) and E12.5 mouse hearts (right) depicting accumulation of reads within the intron, upstream of the orthologous exons 116 (zebrafish) and 223 (mouse).

However, none of the putative centromeric regions on chromosomes 1, 2, 3, 6 and 7 [ 22] showed a significant accumulation of reads as compared to flanking regions (data not shown).

The immunoprecipitated RNA DNA hybrids map heterogeneously within this repeat unit, with accumulation of reads at the known exons of the rDNA gene, and others in the intergenic spacer (IGS) region.

We surveyed 49 convergent transcription units (CTUs) on the 11 megabase chromosomes and in each case we detected significant accumulation of reads in these regions, as compared to flanking sequences (Additional file 2).