CDSs in each young duplicate gene family were aligned according to alignments of protein sequences in Clustalw2.0 [ 94].
All resulting alignments of NCIVs are sorted according to alignment size (number of matched NCIVs).
According to alignments at current assemblies, the extent of conservation of regions among the different species of Pseudomonas was difficult to visualize by ACT, mainly because of multiple chromosomal rearrangements.
Later in this project, the primers P12, P17, und P29 (Table S1) were designed according to alignments that resulted from the inclusion of the amino acid sequences of the FMO of A. caja and A. villica and of the PNO of Grammia geneura, as identified in this project.
Sequence-sequence alignment methods predict epitopes according the alignment of mimotope sequences and the antigen sequence, while sequence-structure alignment methods predict epitopes according to the alignment of mimotope sequences and the antigen structure.
More than 100 serotypes of HRV are known, which have been classified into two species, HRV-A and HRV-B, according to comparative alignment of nucleotide fragments of VP1 [12], [12], VP4/VP2 [13] and 5'UTR [14], [15], and more recently, on complete genome nucleotide sequences [16].
According to the alignment of the sequences of the reference isoform and the assigned 3D structures, interaction residues are projected to the corresponding residues in the AS regions.
The three p orbitals of a given shell are often designated px, py, or pz according to the alignment of their lobes along one of three mutually perpendicular axes.
According to the alignment of deduced amino acid sequences of emmer wheat WMAI, no amino acids were changed by nucleotide mutations in this domain (Table 2).
