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Additional file 3: Table S3 presents the fingerprint profiles of the 403 unique accessions based on 19 SSR markers – one marker from each grape chromosome.
The subpopulations of 1857 accessions based on the admixture model-based algorithm were analyzed in depth using the even distribution of 5000 SNPs.
The phylogeny of the germplasm accessions based on these SNPs suggested the presence of two major clades; one included '305E40' together with its progenitors 'Dourga', 'Tal1/1', 'DR2' and S. aethiopicum, while the second included '67/3'67/3
This software produced a data matrix showing relative closeness of accessions based on SNP data.
Fig. 1 Pattern of variation of 192 accessions based on 61 SSR markers.
Fig. 1 Population structure of 75 accessions based on 119 SSR markers (K = 3).
Table 2 Population structure group of accessions based on Inferred ancestry values G. no.
Fig. 2 A UPGMA cluster dendrogram showing the genetic relationships between the 190 rice accessions based on 30 microsatellite markers.
The dendrogram obtained with ecogeographic parameters did not indicate clear discrimination among accessions based on their geographical locations.
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