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Selected rice panels and reaction of rice germplasm accessions against different isolate.
Genetic variation in resistance was reported among Brachypodium accessions against switchgrass rust.
Polymorphic sites were discovered using GS Reference Mapper to align individual reads from both accessions against the reference contig sequences.
This data center only provides files describing the position-wise bases of 80 accessions against the Col assembly.
Consistent with the above observations, the portion of uniquely mapped reads among the NGS short-read sequences from 50 cultivated and wild rice accessions against the Nipponbare reference genome varied greatly, from 73.0 to 93.0%, with the highest rate in temperate japonica accessions followed by tropical japonica, aromatic, aus, indica, and wild rice accessions.
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To identify cis-NAT pairs, we first compared the sequences of assembled transcripts from each wild Vitis accession against themselves.
Rates of synonymous and non-synonymous substitutions (ω values or dN/dS ratios) were calculated by pairwise comparisons of the synthetic genes of each accession against the 'PN40024' reference genome.
Fourteen out of the 31 sunflower cultivars/ accessions tested against P. spegazzinii (Peruvian pathotype) showed mild chlorotic flecks (PS 1) (Table 3) on a few top leaves that were directly below the heavy inoculum inside the dew chamber, around 6 8 days after inoculation.
Most sequences (81.9%) had best matches against GenBank accessions, 8.0% against UNITE accessions and 10.1% against the collection of reference sequences obtained in this study.
The sequences of the D. melanogaster probes were predicted by blasting primers from the D. melanogaster probe (GEO Profiles accession: GPL6056) against the D. melanogaster Release 5 assembly and searching for unique and proximal (within 600 base pairs of each other) targets.
On the other hand, six accessions that reacted against the Peruvian pathotype had not reacted to the Trinidadian pathotype, and three vice versa (Sreerama Kumar et al. 2016).
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