Table S1: accession values of traits analysed.
The correlation of accession seed oil content between the two locations was high, r = 0.95 (P < 0.0001), but was only moderately high, r = 0.77 (P < 0.0001) and r = 0.78 (P < 0.0001), between the GRIN accession values and those measured at the NE and MD locations, respectively.
A quantitative trait defined in different studies and determined in a range of different environments and years is likely to produce different accession values that are confounded by these non-genetic effects, and it is, of course, the accession means that are used in GWAS.
For each trait, the amount of variation was calculated by the coefficient of variation (CV = standard deviation/average) and by the fold change (maximum accession value/minimum accession value).
In the INRA collection, cluster II included two additional groups with lower (IIc; 19 % of accessions) or higher (IId; 10%% of accessions) SI values than other traits.
* The information of accession, E-value, annotation and source was from the blastn program with NCBI EST database.
Means over all accessions, minimum, maximum values of accession means, genetic standard deviation (SDg) and genetic coefficient of variation (CVg% = 100*SDg/mean), broad sense heritability (h, for family means based on three plants per family).
Gene expression microarray data has been submitted to the GEO database for public access (accession number pending) The expression values of fifteen genes were validated by quantitative RT-PCR (qRT-PCR).
However, for the evaluated accessions, the value for LnP K) did not reach a clear plateau, continuing to increase together with the variances between the tested k.
The table in the file consisted of ID, PTM vocabularies, frequency in UniProt, percentage in UniProt, frequency in the list, percentage in the list, UniProtKB accession number, P-value and corrected P-value columns.
Supplementary Table S1 Main data file with accession numbers, p values, normalized expression levels, fold changes annotations, and chromosomal locations of the 21,495 probes on the Agilent array.
