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License: GPL v3 SRA accession of data used in this paper is SRP058673.
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The variety names of carrots and accession numbers of data sets specific to the carrot genotypes are listed in Table 2.
The addition of data from other accessions, particularly Ull2-5, will hopefully convince the reviewers that rapid flowering and temperature optimum are separable.
Accessions of microarray data used in Fig. 5 are as follows.
Accession numbers and source of data are listed in the table.
In comparison with an organism phylogeny of Violaceae, based on data from Tokuoka [ 25] with an extra accession of Cubelium rbcL, our data suggest that NRPD2/E2 was duplicated twice within the evolutionary history of the family.
The known editing site at genome position 103675 within the ndhF transcript showed a similar difference between accessions as was evident for the ndhB editing sites; however, the editing efficiency of accessions PI223178 and PI610825 was not statistically different (P < 0.05) from that of accession PI418701 (data for the drought-stressed plants are shown in Fig. 9).
The Basic Field Search utility accepts user input in the form of list of ENA (EMBL-Bank) accession numbers followed by selection of data fields by the user to search the database and display the subsets of extracted data from the user specified entries.
For the analysis of SSR markers, leaf samples from 20 clones of H. brasiliensis, 2 accessions of Manihot esculenta, 3 accessions of Jatropha curcas and 1 accession of Jatropha gossypifolia (Supplementary data, File S1) were collected and DNA was extracted using a DNeasy Plant Mini Kit (Qiagen).
HUPO PPP and PeptideAtlas proteins are indexed with IPI accession numbers, whereas the other sources of data are indexed with other types of identifiers such as Swiss-Prot accession numbers and RefSeq IDs.
Sample accession numbers and cell lines of origin can be found in Table 3.> -wrap-foot> Accessionumbersrs and cell line origin of data used for cross-reference with in silico results.
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