Sentence examples for accessibility secondary from inspiring English sources

We also examined different structural properties such as solvent accessibility, secondary structures, and hydrogen bonding patterns of coevolved sites (Figure 5).

Structural properties such as solvent accessibility, secondary structures, and hydrogen bonds were computed from the protein structure using the JOY package [45].

We topped this significantly by combining the output from various prediction methods with sequence profiles and other useful features such as predicted solvent accessibility, secondary structure and low complexity regions.

This would suggest that other factors such as RNA accessibility, secondary structure or protein protein interactions may modulate RBM47 target choice (Li et al., 2014).

Hydrogen bonds, solvent accessibility, secondary structure and JOY-based representations were obtained using JOY package (85) for all the entries in the database.

Structure-based features such as solvent accessibility, secondary structures, hydrogen bonds and residue compactness were computed from the individual protein structures using JOY package.

Furthermore, true, localized variability could have a significant impact on solvent accessibilities, secondary structure prediction, estimation of electrostatic and potential energies, and template-based homology modeling techniques [ 8].

We computed multiple alignment studies, solvent accessibility calculations, secondary structure analysis, stabilization centers and stabilizing residues before and after the docking process.

Propensity scales have been developed based on antigenicity, hydrophilicity, inverted hydrophobicity, accessibility, and secondary structure.

The quality of the F. tularensis MEP synthase model was evaluated using ProQRes[10], which uses atom-atom contacts, residue-residue contacts, solvent accessibility, and secondary structure information to assign an accuracy score from 0 (unreliable) to 1 (reliable).

In addition, several extra features for calpain cleavage sites prediction, such as PEST sequence (short peptide rich in Pro/P, Glu/E, Ser/S and Thr/T), solvent accessibility and secondary structure were considered and analyzed in PoPS and SitePrediction [19] [21].