Sentence examples for accepted annotation from inspiring English sources

We have chosen the richest, well accepted annotation database, the gene ontology biological process (GOBP) database [45] as the major list of pathways, and repeated the analysis with two more lists, for the sake of completeness (see below).

In summary, GATU correctly transferred and automatically accepted annotation for 146 of 148 genes from the reference sheeppox genome to the target genome.

In such cases, the accepted annotation was switched to that of the relevant match, provided their BLASTP and RPS-BLAST e values remained below the 1 e−05 threshold.

Although these efforts have all been more or less limited in scope and none have led to a widely accepted annotation standard, we see them as important steps in the direction we seek to go and as the natural progenitors of our approach.

This requires that a consensus commonly accepted annotation scheme is designed in order to allow for efficient data exchange, integration, sharing, and visualization between different platforms and to further reduce the need for reprocessing of metagenomic datasets, a task which is very expensive computationally.

Clicking on a row in the table (containing an accepted annotation) will automatically highlight this annotation in the graphical view; the Jump button moves the graphical display to center the ORF in the window.

The discrepancies with the accepted annotations, found at TAIR [ 76] and TIGR [ 77], respectively, demonstrate the benefit of using full-length cDNA sequences for this analysis.

All unisequences were subjected to search by BLASTX against the Arabidopsis protein database at The Arabidopsis Information Resource (TAIR) for transcript homologs at an E value of less than 1e-5 [ 14], and the accepted annotations had at least one high scoring pair (HSP) of minimum length 30 covering at least 75% of the query sequence with 80% identity.

Intron hints were also generated directly from the read to genome alignment generated by Tophat, however predicting with the hints produced by the training server produced predictions with better sensitivity and specificity when compared to the accepted annotations, and these results were therefore used for comparisons with CodingQuarry.

These facts, in combination with the annotation gaps mentioned above, have encouraged us to consider the generation of an extensive repository of automatic functional annotation making use of the widely accepted functional annotation engine Blast2GO.

It is worth mentioning that the well accepted DAVID annotation tool [58], [59] does not find any enriched pathway in any of the signatures, which passed FDR of 0.9, other than organelle organization and biogenesis in Wang's signature (q = 0.36).