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Most graph randomisation protocols, including the one used in this paper, are defined via a degree preserving MCMC dynamics in the space of graphs, which is defined such that it produces a relaxation towards an equilibrium state where all acceptable graphs are generated with prescribed probabilities.
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The following parameters were used: Water molecules are removed; AD distance cutoff 5.8 Å with an epsilon value 0.01 Å; size we used for an acceptable sub-graph match is 8 atoms; maximum RMSD cutoff used is 0.1 Å; and the safety distance used to avoid a collision is 1.95 Å.
William Foege, the first author on both of the earlier papers and now a consultant to the Bill and Melinda Gates Foundation, stands by the figure, arguing that logarithmic plots are perfectly acceptable in epidemiological graphs.
The high values of the correlation coefficients (r) and negligible intercepts (a) indicated that the linearity of the calibration graphs was acceptable.
Because both graphs indicated acceptable linear association, we regressed local out-rate on net rate (regression coefficient = -0.89, t = -3.94; p < 0.0001; R2 = 0.13) and nonlocal in-rate on net rate (regression coefficient = 0.98, t = 21.65; p < 0.0001; R2 = 0.82).
Should the reviewer and editor decide that these calculations are acceptable, it would be simple to substitute the graphs in Author response image 1 (below) for those currently in Figure 5.
The meander pattern presents an acceptable distortion rectifying, but it is actually a graph that just one of the parameters of X or Y changes at a time.
The value of acceptable regret is plotted in the regret DCA graph to visually facilitate the decision making process.
Emanating from the application of a new graph-based methodology, they are designed to find acceptable domain-specific solutions in real-time.
The graph shows what is necessary for countries to maintain an acceptable standard of living for their citizens while, at the same time, maintaining sustainable resource use.
The tour design is guided by Tisserand graphs overlaid with a simple and accurate radiation model so that tours including Io flybys can maintain an acceptable radiation dosage.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com