Sentence examples for abundant transcripts with from inspiring English sources
We report for the first time in sunflower a significant number of novel sequences related to responses to abiotic and biotic stresses as well as low abundant transcripts with high similarity to homeobox genes, transcription factors and signalling components.
When sampling 10,000 transcripts, the experiment (typical for EST studies) should have enough power to identify all abundant transcripts with expression level greater than 500 copies per cell.
The 100 most abundant transcripts with BLAST annotations in each tissue are listed in a spreadsheet (Additional file 3).
In a microarray screen for nuclear, polyadenylated noncoding RNAs, we identified three abundant transcripts with significant nuclear retention: the canonical ncRNA, XIST, and two large noncoding loci on human chromosome 11.
In case of low abundant transcripts with poor read coverage in our samples we used additional data obtained from embryo and pupa to support the re-annotation (iBeetle genome browser) [ 73].
It is interesting to note that a number of other RNA-splicing factors or spliceosome components produce abundant transcripts with retained introns (for example, B52, CG1646, Moca-cyp ) or alternative exons that disrupt the CDS (Caper ).
In addition, the second abundant transcript with 20,460 mapped reads was similar to a hypothetical protein.
The most abundant transcript, with 7,284 reads, was annotated as a chloroplast-unknown-protein.
Hence, a detectable proportion of a given abundant transcript with a processed 5′ end can survive the enrichment procedure.
The chromatin association signal for Lethe is also significantly greater than that of GAPDH, a far more abundant transcript with presumably more copies of primary transcripts.
To estimate the quality of the template and to compare expression levels, we amplified mouse glyceraldehyde 3-phosphate dehydrogenase (GAPDH), a ubiquitously expressed abundant transcript with specific primers (5'-AACGGGAAGCCCATCACC and 5'-CAGCCTTGGCAGCACCA).
