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"List hits" are the numbers of differentially abundant transcripts that belong to the gene category.
In this way, highly abundant transcripts that were potentially differentially expressed during cold acclimation and during fruit development were identified.
The normalisation process helps to reduce over -sampling of abundant transcripts that are presentin high quantities, hence increasing confidence of detecting a larger proportion of rare transcripts.
The major objective of the study was to identify genes encoding for potential regulatory components of the FAC-mediated responses by looking for low abundant transcripts that were rapidly and transiently induced after 18 3-Glu elicitation.
The abundant transcripts that may mediate the maintenance of an optimal water balance in old mycelium (see previous section) suggest that a more generally important buffering mechanism may be at work.
The Early Light Inducible Protein A (ELIP-A) transcript is the only member of the abundant transcripts that we have previously reported [ 33] as belonging to the group of proteins we have termed, rehydrins [ 31].
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The most abundant transcript that is uniquely present in the testis corresponds to a gene (NV31252; FPKM > 9,000) that was previously annotated in the Nvit_V2.1 genome as a protamine-like gene.
This is true especially for the large number of non-specific, non-conserved, and non-abundant transcripts that are frequently subjected to degradation by the regulatory mechanism nonsense-mediated decay [ 20].
Furthermore, considering that MdPIN1 and MdPIN7 are the most abundant transcripts and that MdPIN10 and MdPIN4 were not detected in seed, it appears that during the fruitlet abscission a decrease in PAT at the level of the seed occurs.
Thus, PMCHL1 transcripts are found in testis and fetal brain and are more abundant than PMCHL2 transcripts that are observed only in testis.
Acropora may therefore follow this pattern of abundant maternal cyclin transcripts that drive very rapid cell proliferation early in embryogenesis, followed by lower transcript levels with the onset of slower developmentally regulated cell cycles.
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