The phrase "abundant sequences that" is correct and usable in written English.
You can use it when discussing a variety of sequences that are plentiful or numerous in a specific context, such as mathematics, biology, or data analysis.
Example: "In our research, we discovered abundant sequences that indicate a strong correlation between the variables."
Alternatives: "plentiful sequences that" or "numerous sequences that".
This is supported by the annotation of the dominant pORF clusters (with >10 non-redundant sequences, Table 3) and Fig. 2. The most abundant sequence that could be annotated was PF02407, Putative Viral Replication Protein, and the second most abundant was PF00910, RNA helicase, which is thought to be involved in viral infection (Table 3).
Now to the "genomic foundations for the new biology": (i) "Genomes can have abundant DNA sequences that are of no apparent functional benefit to the organism" -Not really abundant when it comes to prokaryotes and, especially, viruses.
Transposable elements (TEs) are abundant genomic sequences that have been found to contribute to genome evolution in unexpected ways.
Similar to other Spiroplasma genomes that have been studied to date, we found that this genome contains abundant repetitive sequences that originated from plectrovirus insertions.
The new genomic foundations of biology are not nearly as convenient as those of the Modern Synthesis: Genomes can have abundant DNA sequences that are of no apparent functional benefit to the organism.
The lack of a complete genome sequence of E. faecium might be due to factors including genome plasticity of E. faecium that harbors large insertions and deletions [ 2], and abundant repetitive sequences that hinder the assembly of a complete genome from sequence reads [ 2, 3].
Many DNA sequences are more abundant near the TSS than elsewhere [ 15- 18] and the six most abundant CpG containing sequences that are localized in proximal promoters are known TFBS and can predict RNAP binding to housekeeping promoters with similar accuracy as the presence of CpG islands.
Phylogenetic analysis of the 10 most abundant sequences indicates that members of Clostridia followed by Bacteroidia predominated in fresh manure (Figure 2).
After the OTU picking step, the representative sequence for each OTU, namely, the most abundant sequences in that OTU, is chosen for subsequent analyses in order to reduce the computational power and the analysis time, without losing the frequency information.
