Sentence examples for abundance was calculated from inspiring English sources

Gene expression abundance was calculated using htseq-counts on mapped reads using UCSC Mus Musculus mm10 gene annotation, followed by voom, with sample quality weighting for DEG analysis.

Gene expression abundance was calculated using the htseq-count function from the HTSeq Python package47, with GENCODE v19 gene annotation as reference48.

Estimation of transcript abundance was calculated, and the count values were normalized to the upper quartile of the fragments per kilobase of transcript per million fragments mapped reads (FPKM) using Cufflinks (cuffdiff) v2.1.148.

Data were normalized to the endogenous control POLR2A [29] and mRNA abundance was calculated using the ΔΔCT method [30].

Relative abundance was calculated only considering those microorganisms in which the number of reads higher than 0.5% of the total reads.

Data were normalized to GAPDH, and mRNA abundance was calculated using the ΔΔCT method [60].

Transcript abundance was calculated using the ΔΔCt method (normalization with Gapdh).

Protein abundance was calculated only if a protein had three or more peptides which passed the above filters.

To compare small RNA expression from different libraries, abundance was calculated as transcripts per quarter million sequences (tpq) [8], [10].

Meta-community species abundance was calculated as the total number of individuals of each species in all sites in 1966.

Viral abundance was calculated as hemagglutination (HA) units from a standard curve using a positive control with known HA content.