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Protein IDs and original abundance values were obtained from the LC-MS/MS mass spectra.
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Protein disorder values were obtained using disopred16 with default settings.
The branch-support values were obtained by bootstrapping (500 resamples).
Expression values were obtained using gcrma algorithm.
HBI values were obtained from the literature.
No other values are obtained.
Abundance estimation and FPKM value was obtained using RSEM [ 35].
The first value was obtained at approximately 8 a.m., and the values are completely normal.
P-values are obtained from a Mann-Whitney test.
The abundance values were then corrected for the amount of transport gains or losses as obtained by the model runs.
All peptide abundance values were transformed to the log10 scale.
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