Sentence examples for abundance expressed from inspiring English sources

The sequences of qRT-PCR primer pairs for NaLHY, NaTOC1, NaZTL and NaFKF1 are listed in Additional file 1. Transcript abundance expressed relative to the expression of N. attenuata ELONGATION FACTOR gene.

To examine the consequences of this approach on the sequencing of highly expressed transcripts, the relative expression level of unigenes was estimated by calculating the transcript abundance expressed as reads per kilobase per million mapped reads (RPKM) [ 26].

Here, species abundance, expressed in terms of density of trees, saplings, and seedlings, was regressed with the modeled habitat suitability thresholds using SPSS software.

In general, the rank order differences that we observed correlate well with analog miRNA abundance, expressed as DCt in the median normalized data or DDCt in the sno135/miR-25 normalized (Statminer) analyses.

Furthermore, we compared bacterial communities found in NHP fecal samples with that of human stool samples at the genus level using RDP Classifier (Figure S8, relative abundance expressed as per thousand sequences).

However, changes in rank order are not informative in terms of absolute (or more precisely analog) miRNA abundance, so we relied on Limma to calculate normalized abundance, expressed as DDCt, which corresponds to −log2 fold change normalized to sno135b/miR-25.

The small contribution of Treg cells (both in terms of TCR diversity and clonal abundance) expressing an exclusive set of TCRs and preexisting in healthy mice to the population of Foxp3+ T cells in tumors is surprising, especially considering that these cells still constitute a significant proportion of Foxp3+ Treg cells in the tumor draining lymph nodes.

The results showed that Solexa technology can quickly assess millions of short sequences of both high-abundance and low-abundance expressed genes in sugarcane, similar to previous research reports [ 27– 34].

The ranked values from each of the 5 data sets were then summed and ranked with the transcript most upregulated upon miR-203 ablation and downregulated upon overexpression being assigned a value of 1. Normalized transcript abundances (expressed as Reads Per Million) were used for mean-centered unsupervised hierarchical clustering using Cluster 3.0 software.

The abundance of expressed genes and the differential expression profiles found in oocytes confirm the hypothesis that oocytes are dynamic cells.

Re-analyzing publicly available raw RNA-Seq data, we determined the human leukocyte antigen (HLA) type and abundance, identified expressed viruses and calculated gene expression of 1,082 cancer cell lines.