The phrase "abundance calculation" is correct and usable in written English.
It can be used in contexts related to mathematics, economics, or resource management where one is determining the quantity or availability of resources.
Example: "The abundance calculation revealed that we have more than enough resources to meet our needs for the upcoming project."
Alternatives: "resource estimation" or "quantity assessment".
Artificial duplicates should be removed for correct abundance calculation.
Toolkit provides a package of various tools for the analysis of high-throughput sRNA data including the sequence preprocessing tool which aids in conversion of FASTQ to FASTA format, removal of adaptor sequences, extracting sequences of defined size range and their abundance calculation.
Following removal of reads that either failed to align to BCM4 or aligned to more than one position in the genome, and the removal of all but one of the reads that mapped to exactly the same position on the genome (i.e. putative PCR duplicates), an average of 3.8 million reads per lane were retained for read abundance calculation.
With genomic DNA mixes, relative abundance calculations based on T-RFLP patterns did not reflect input ratios.
We demonstrate the nuclear dynamics with nuclear network abundance calculations, with a model of sudden compression and reexpansion of the nuclear gas, and with nuclear energy decompositions of a nuclear-mass law.
This would also affect the abundance calculations due to missing family members/loci.
For abundance calculations, reads from Control and Bj libraries were differentiated based on ID tags.
Relative transcript abundance calculations were performed using comparative CT (ΔCT) method as described by Schmittgen and Livak [ 18].
Those four species that were not surveyed in Parikkala 2002 were excluded also from Kuikanniitty species richness and total mean abundance calculations to better enable site comparisons.
Therefore, we improved the description of the meaning of the NSAF abundance calculations in our revised version (see Results section and Materials and methods).
The clustering of identical reads was executed for compression purposes only, and transcript-abundance calculations employed the actual read-abundance of the clustered identical reads.
