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Other possible choices for distance between (mathbb {P}) and (mathbb {Q}) are absolute, squared, Hellinger, and absolute divergence distances [28].
To combine estimates for absolute divergence, the mean was used.
Between the non-hybridizing taxa, the patterns of relative and absolute divergence were not as consistent.
Genetic distances are transformed into absolute divergence times by incorporating calibration points.
Absolute divergence dates were obtained by calibrating against 12 fossil estimates or ranges from the literature (Table 1).
In addition to relative divergence, for each comparison we also calculated absolute divergence (dxy) [ 44, equation 10.20].
Similar(31)
For each gene, the number of segregating sites (S), nucleotidic diversities (θw [35] and θπ [36]), Tajima's D statistic [37], Ramos-Onsins and Rozas's R2 statistic [38] minimum number of recombination events (Rm), [39] and absolute divergences (DXY) were estimated using the DnaSP version 4.10 software package [40].
However, little is known about the absolute sequence divergence of FIV.
We utilized equal branch lengths (i.e. branch lengths set to 1.0) instead of the absolute estimated divergence times between species.
These results rule against the hypothesis of absolute functional divergence between bona fide CAD genes and CAD-like genes.
Sliding window (15-kb window size, 5-kb step size) absolute genomic divergence (dxy) across the red (D ) interval and genomic regions unlinked to color pattern.
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