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Since a trimmed mean (see below) was used to estimate the signal for each probe set, the absent value for flagged spots was dropped.
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If parents indicated that they had forgotten to administer the formulation to the child, then the absent VAS scores and absent values for the result of the intake were considered 'missing values'.
However, these associations may be absent in our study because of the high percentage of missing values for the factor medical history.
If all eight replicates for a particular probe set were assigned an "absent" value, the probe set was removed from further consideration.
For the small number of patients with missing values for mechanical ventilation (7.9%) or organ dysfunction (1.2%), ventilation or organ dysfunction was also assumed to be absent.
Only features deemed present by Imagene 5.6.1 (excluding marginal and absent values) were used for analyses.
Integromics RealTime StatMiner distinguishes between two types of non-detects— undetermined values are those that do not exceed the Ct threshold and absent values are those for which no reaction occurred.
Ultimately, absent a wood density value for a species or genera, a default regional wood density value of 0.56 for Central America was used [52].
Ultimately, absent a wood density value for a species or genera, a default regional wood density value of 0.56 for Central America was used [ 52].
There are three possible values: (1) "present", for detection P-values < 0.04, (2) "absent", for P-values ≥ 0.06, and (3) "marginal" for intermediate P-values.
Our data shows that when the Affymetrix detection call is related to MPSS tpm value for genes called "absent" by GCOS greater than 90% of the genes also have a tpm of zero, which indicates that the technologies have a similar level of low-end sensitivity.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com