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The phrase "abnormalities were excluded from" is correct and usable in written English.
It can be used in contexts where you want to indicate that certain abnormalities have been intentionally left out or not considered in a particular analysis or study.
Example: "In the clinical trial, all participants with known abnormalities were excluded from the final results to ensure the accuracy of the data."
Alternatives: "abnormalities were omitted from" or "abnormalities were disregarded in".
Exact(12)
Animals with ocular abnormalities were excluded from the study.
Hospital referrals for planned surgeries (5 circumcisions, 4 hernias, and 4 other congenital abnormalities) were excluded from the analysis.
Children with known cardiac abnormalities were excluded from this group.
Patients with other ECG abnormalities were excluded from the study.
Subjects with such abnormalities were excluded from the current study.
Subjects with pituitary abnormalities were excluded from the study.
Similar(48)
MRIs showing a pituitary gland abnormality were excluded from the study (n = 3).
Women with adverse pregnancy outcomes (miscarriage, stillbirth, congenital abnormality) were excluded from analyses.
Infants and children with acute or chronic infection, severe underlying disease or chromosomal abnormality were excluded from the study.
Stillbirths, infants who died before reaching their first birthday or born with a congenital abnormality were excluded from the study, as were mothers who gave birth prematurely (< 37 weeks according to gestational age calculated by LHWs).
Five participants whose images had excessive scanner artifacts or showed gross anatomical abnormalities were excluded.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com