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Figure 15 reports a piece of the user interface of a Web application implemented for supporting a IoT-based scenario.
BioTriangle is designed as a web application implemented in an open source Python framework (Django) for the Graphical User Interface (GUI) and MySQL for data retrieval.
Availability: CEpBrowser is a web application implemented with PHP, MySQL, C and Apache.
LabKey Server is a web application implemented in Java that runs on the Apache Tomcat web server and stores its data in a relational database engine.
On the client side, Saint is a web application implemented in Google Web Toolkit and hosted on a Tomcat server, with a query translation service connecting to a number of external web services running on the server side.
The web tool consists of two components: 1) a MySQL relational database and 2) a web interface implemented in PHP, running on an Apache web server and using Perl scripts for batch processing.
Results: PIE (Protein Interaction information Extraction) the search is a web service implementing a competition-winning approach utilizing word and syntactic analyses by machine learning techniques.
Availability: A web tool implementing the algorithm presented in the article (REPETITA) is available with additional details on the data sets at the URL: http://protein.bio.unipd.it/repetita/.it/repetita/
RAP (RNA-Seq Analysis Pipeline) is a web application implementing a fully automated analysis workflow, designed to integrate in-house developed scripts as well as open source analysis tools into one pipeline.
We used a web server implementing the Shapiro and Senapathy model (http://ast.bioinfo.tau.ac.il/SpliceSiteFrame.htm) to evaluate the strength of the splice sites of the cassette exons as well as of the exons flanking them.
My own submission was a web app that implemented a graphing calculator in JavaScript.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com