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This tool allowed us to calculate the thermodynamic profile over the entire genome of Saccharomyces cerevisiae with a step size of 1 bp, and a varying window size (100 bp unless explicitly indicated).
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Since individual SNP-based estimates of FST are highly variable and may therefore be unreliable indicators of differentiation at a genomic locus [ 27, 28], we calculated an average of FST values for all SNPs contained in varying window sizes, from 50 Kb to 1.6 Mb ("zooming out" by a factor of two), each centered on the HIV-1-associated SNP.
The algorithm yields an optimal design from among a theoretically unlimited number of possibilities; it can also supply near-optimal, smoothly varying window distributions (or optimize the variation in width of a long slit-like window in the hood wall) satisfying additional constraints imposed by the designer.
We optimized our cluster searches by varying window size and score-cutoff parameters until we obtained a list with the greatest number of expected Tinman targets and other genes whose expression overlapped with tinman.
This model uses multiple filters with varying window sizes to obtain multiple features.
As such, transition bandwidth of FIR filters can be directly tuned by varying window length for on-line tuning applications.
Results were robust to varying window sizes (data not shown).
Shown in table 2 is the rank of the 6q21 region for varying window sizes.
For example, varying window width had little effect on SANS, whereas varying word size k had a large effect on KSEARCH (Fig. 5).
We applied WD on varying window sizes around PAS clusters and found that the high performance largely resulted from features in the flanking region of (−40,+40).
The main advantage of wavelet transform is that it has varying window size, being broad at low frequency and narrow at high frequency.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com