Sentence examples similar to a variant size from inspiring English sources

Given a specific genome of interest, a variant-size and a k-mer size, the power to detect variants was modelled, interestingly the authors noted that without a reference, it was difficult to distinguish read errors and repeats from genuine SNPs.

For this, the finite matrix C is chosen as a simple median filter with variant size.

To investigate the robustness of indel/CNV calling using HTS, we assessed data from commercial genome sequencing vendors and found that Complete Genomics (CG) (Drmanac et al. 2010) detected the greatest number of variants and yielded a more consistent and even variant size distribution (Supporting Information, Figure S1 and Table S1).

However, for each PSHET the line with the heterozygous INDEL call had a variant of size 13 bp on average.

The sexual chromosome variant size ratios were calculated measuring the length of a pair: the shorter chromosome variant against the other one.

We investigated the validation performance on the basis of the discovery platform marker coverage, the predicted variant size and the allele frequency as evaluated in the discovery dataset.

First, we detect candidate CNV loci by combining information across multiple samples without imposing restrictions to the number of coverage markers or to the variant size.

We evaluated the performance of IgC2N through a simulation study and assessed that it has at least 80% power to detect rare (1%) CNVs with sufficient marker coverage or sufficient variant size in datasets with larger sample size (N = 2000) while detecting common CNVs with similar size or marker coverage with datasets of smaller sample size (N = 200).

Focusing on CEU population datasets, we then investigated possible enrichment for CNVs regulatory effect with respect to MAF, genomic complexity (segmental duplication), mechanism of formation, variant size and type of polymorphisms within the cis analysis window.

However, since the audio stimuli came from a wide range of animals of different breeds and sizes, and since each growl exemplar was re-synthesised to both the small and large variant, size was the only parameter that was consistently common between the presented audio stimuli and one of the two visual models.

VarSim reports TPR and PPV broken down into bins by variant type and also variant size.