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Furthermore, a uniform analysis method for micro- and nanoscale characterization over five orders of magnitudes was found by combining optical profilometry data, at the microscale level and atomic force microscopy data, at the nanoscale level.
The datasets we use were created by the ENCODE Analysis Working Group AWGG) using a uniform analysis pipeline.
Statistical analyses were conducted within each study according to a uniform analysis plan and subsequently meta-analyzed (details below).
Here, we report a uniform analysis of vertebrate transcription factor ChIP-seq datasets in the Gene Expression Omnibus (GEO) repository as of April 1 , 2012
Parametrical tests were used for normally distributed data whereas non-parametric tests were applied for all univariate tests to ensure a uniform analysis strategy.
Even though there have been numerous studies of CIMP in individual cancer types, a uniform analysis across tissues is still lacking.
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Hence, the present study provides a more uniform analysis, covering all age groups, and uses set lower cut-offs as the major determinant of low intake for each of the micronutrients reported.
We aim at providing a resource for the genetic disease community to automatically analyse whole exome-sequencing samples with a standard and uniform analysis pipeline, thus collecting variant allele frequencies by disorder.
12 13 Therefore we restricted the end point of this study to invasive breast cancer, to achieve a clear and more uniform analysis where the results are easier to interpret.
Corresponding authors of these studies (n = 19) were contacted by electronic and regular mail (two electronic reminders) and invited to submit data using a standardized data extraction sheet and uniform analysis plan.
The initial release of Galaxy workflows [ 3] for modENCODE has focused on peak calling in ChIP-seq data, taking advantage of the fact that the ENCODE and modENCODE projects have jointly adopted a uniform peak calling pipeline that provides uniform analysis of human, mouse, worm and fly.
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