The phrase "a transcriptome assembled" is correct and usable in written English.
It can be used in scientific or academic contexts, particularly in discussions related to genomics or molecular biology, where transcriptomes are analyzed or constructed.
Example: "The researchers presented a transcriptome assembled from various tissue samples to study gene expression patterns."
Alternatives: "an assembled transcriptome" or "a constructed transcriptome."
Meta-assembly refers to a transcriptome assembled from more than one sequenced sample.
To demonstrate that a transcriptome assembled de novo can serve as a reference sequence for short-read mapping, we used the short read alignment program BWA to map three paired-end lanes of Illumina sequence to the final contig set.
To increase the completeness of the proteomic analysis and to account for deficiencies in the Oasis assembly, we conducted X! Tandem searches against three other protein databases; (1) ESTScan predictions from a transcriptome assembled from the same reads using Trinity [ 25]; (2) all Cnidaria proteins from the GenBank non-redundant protein database; and (3) the complete SwissProt database.
In the current study, we applied Illumina sequencing to characterize a de novo transcriptome assembled from a mixed sample of three target tissues (adductor muscle, gills and hepatopancreas) of male and female P. viridis collected from the field and from various designated exposure scenarios.
Therefore the 24'500 to 28'500 estimation is compatible with the fact that the RNAseq transcriptome assembled here incorporates a large share of all sequences expressed in Hydra.
The transcriptome assembled using sequences of 12 samples was used as a reference.
The first C. pepo transcriptome, assembled from summer squash root, leaf and flower tissue, constituted a huge advance in C. pepo genomics.
Gene expression was estimated by mapping reads using Bowtie 1.0 (Langmead et al. 2009) to the whole adult A. glycines transcriptome assembled by Liu et al. (2012).
The total size of the transcriptome assembled was 42 Mb.
An abundant transcriptome assembled separately from 102,000 highly expressed contigs was annotated and analyzed for gene ontology and metabolic pathways.
Transcripts of TLR genes were identified in transcriptome assembled from liver and spleen mRNA of 14 newts.
