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The phrase "a three dimensional structural model of" is correct and usable in written English.
It can be used in contexts related to architecture, engineering, or scientific modeling where a representation of a structure in three dimensions is being discussed.
Example: "The researchers presented a three dimensional structural model of the protein to illustrate its complex interactions."
Alternatives: "a 3D structural representation of" or "a three-dimensional framework of".
Exact(9)
A three dimensional structural model of the TcTrx has been created based on the known structure of Malassezia sympodialis Trx (MsTrx, PDB ID: 2j23).
A three dimensional structural model of the TcTrx (purple) has been created based on the known structure of Malassezia sympodialis Trx (MsTrx, PDB ID: 2j23).
A three dimensional structural model of a protein is thus essential for the detailed understanding of its physiological function and the characterization of essential properties such as ligand binding and reaction mechanism.
(B) A three dimensional structural model of TcTrx.
Here, we report a three dimensional structural model of Taiwanofungus camphorata thioredoxin based on its sequence.
A three dimensional structural model of T. camphorata Trx based on its TcTrx cDNA sequence.
Similar(51)
To understand structure-function details for GmRLK18-1, a three dimensional structural model was constructed.
Figure 2 Alignment of the amino acid sequences of TcTrx with other organism's Trx and three dimensional structural model.
Three dimensional structural models for WsCYP98A and WsCYP76A were generated using Phyre with >90% accuracy on the basis of homology based modelling using cytochrome P450 1a2 (PDB: 2HI4) as template.
A three-dimensional structural model of ANTR1 was constructed using the crystal structure of glycerol 3-phosphate/phosphate antiporter from E. coli as a template.
To identify interface residues that are important for CSP-2B binding to CED-3, we constructed a three-dimensional structural model of the CED-3/CSP-2 complex based on the crystal structure of active caspase-3 22.
More suggestions(15)
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com