The third step is to calculate the distances between a category-assigned GO term (G22) and a GO term to be categorized (G32), which is defined as: where p is a parent term assigned to a category and x1 is a term to determine its category.
In terms of length distribution of annotated sequences, 70%to90%0% of the sequences with length ranging from 200 AA to 1,500 AA were functionally annotated, while 100% of the sequences with length between 1,500 AA to 3,500 AA had a GO term assigned to them.
The organization is one of several Iraqi "Special Groups," a U.S. military term assigned to Iranian-backed Shiite militias operating primarily in and around Sadr City and Baghdad.
The origin of the name is uncertain, but is thought to be a Gothic or Indo-Aryan term assigned to a Slavic tribe.
For each go term assigned to a given protein, all parent terms were considered as well.
GO terms were interpolated to ensure that for each GO term assigned to a gene, all "parental" terms of the GO term were also assigned to that gene.
In particular, teams were asked to return the textual evidence for the GO term assigned to a defined set of proteins.
A gene-based log-odds score was subsequently derived as the sum of log-odds ratios for each Pfam domain and GO term assigned to a given gene [ 14].
The highest scored new GO term assigned to this gene was protein peptidyl-prolyl isomerization (GO 0000413).
