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Unlike folksonomy tags used in most traditional tag clouds, the tags in our system are ontological terms (classes and properties), and a user can construct a context with a set of tags that defines a subset of instances.
The BBC method has been tested on a large set of instances, and compared to a Benders decomposition algorithm on a subset of instances without assignment costs, where the two approaches can be compared.
We then select a subset of instances that are not recognized by any specialized PWMs and use those are reliable negative instances to train a binary classifier.
The first of these, in situ disturbance, includes a large diversity of subcontexts, including cases of point source pollution, acidification, harvest, and a subset of instances of climate change.
The key idea here is to use a generative approach to model each peptide class and select a subset of instances that are not recognized by any specialized model.
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The key limitation of this strategy is that such approaches aim to identify the component groups that are present in all or most of a given set of network instances and would likely miss those that are only common to a subset of the instances.
We drew without replacement a subset of 7803 instances of the multinomial distribution Ω from functional and non-functional seed matches.
A subset of these instances included a ZIP-6 (bZIP) motif at a one base distance 3′ of the NHR-232 motif, yielding a multi-family trimeric CM. 10.7554/eLife.06967.023 Figure 8. Composite motifs enriched in C. elegans ChIP-seq peaks.
Active learning attempts to address this issue by selecting a subset of most critical instances for labeling [58].
Therefore, to explore the next neighborhood only the tentative moves that refer to this affected solution part have to be re-evaluated, or in other words, only a subset of the SMD instances has to be updated, according to the modified solution state.
In contrast to common evaluations of miRNA target site prediction algorithms, this is not an assessment of a subset of top scored instances but of all predictions.
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