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Other algorithms use a collection of subsequences containing a binding site (for example the promoter regions of coregulated genes or subsequences derived from ChIp-chip experiments) to deduce the form or motif of the binding site which is then used to identify sites in other sequences — reviews of these methods are given in [ 7, 8].
The joint structure of two subsequences derived from one of the following cases.
Expressed Sequence Tags (ESTs) are short subsequences derived from randomly isolated cDNAs [ 4].
Appropriate subsequences derived from P. falciparum sequences were added to the dataset.
Therefore, in this situation, our algorithm avoids selecting subsequences that contain far_neighbors to design the siRNA, and it would unmark the subsequence with far_neighbors unless the far_neighbors of a subsequence were derived from the genes from which its neighbors were derived.
If we designed an siRNA that was derived from a subsequence that contained far_neighbors, this designed siRNA would not be guaranteed to target these far_neighbors.
(a) is derived from subsec.
(Ethanol is a fuel derived from corn).
The DRT hypothesis (Hp1) asserted that proto-rRNAs might have derived from intermediate subsequences between aa-binding sites on a DRT, because these intermediate subsequences had a structure, and thus a function, to facilitate the ligation of amino acids on the aa-binding sites.
A multiple alignment can then be derived from the graph using an efficient heaviest common subsequence algorithm (Jacobson and Vo, 1992).
To simplify the utility calculation, this work then presents a maximum utility measure, which is derived from the principle of traditional sequential pattern mining that the count of a subsequence in the sequence is only regarded as one.
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