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StreamAligner takes input as a stream of reads.
The output of sequencing (reads) is given as input to StreamAligner as a stream of reads.
Initially, a stream of reads from sources like Kafka, HDFS or flume are distributed across mappers and each read is partitioned into seeds (Algorithm 3, lines 2 6).
Initially, a stream of reads from data sources like Kafka, HDFS or flume are taken as input and stored as JavaRDD Fig. 5 Lineage graph for Phase III (stream mapping).
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Thus a data manager works on a stream of read, update requests on the underlying data-object.
After a stream of record lows, it makes a change to read about German yields going up: Chris Adams (@chrisadamsmkts) Blimey.
Therefore, we propose a new sequence aligner which can align stream of reads on reference genome in real time.
They can not process stream of reads.
Algorithm 3 describes the process of mapping stream of reads on the reference genome.
StreamAligner can align stream of reads on reference genome in real time.
StreamAligner is the only sequence aligner which can align stream of reads.
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