Sentence examples for a standard variant from inspiring English sources

Finally, variant calling is performed using a standard variant caller like GATK or specialized tools such as VarScan 2 [ 21] and MuTect [ 22].

Since "regurgitation" is ambiguous and may refer to different kinds of objects, it must be entered into the terminology as an object attribute with a standard variant "Insuffizienz" (engl.: regurgitation).

Duplicate reads were removed and single nucleotide polymorphisms (SNP) and insertion/deletion (INDEL) discovery and genotyping was performed on all samples individually using the GATK HaplotypeCaller producing a standard variant call format (VCF) [ 20].

The ⊕ commutativity requirement is met in all standard variants of matrix multiplication, and thus does not pose a significant restriction in practice.

We utilise SPARK's machine learning library, MLlib, and provide an interface to the standard variant data format, Variant Call Format (VCF) [ 4], which opens up the application of MLlib's different machine learning algorithms to a wide range of genotype-based analysis tasks.

A 2×2×2×4 mixed ANOVA with Group (AP, NAP) as an between-subjects factor, Test (standard, variant), Type of error (SAME, DIFFERENT), and Interval (third, fourth, fifth, sixth) as repeated factors was carried out.

The resulting tool, VariantSpark provides an interface from MLlib to the standard variant format (VCF), offers seamless genome-wide sampling of variants and provides a pipeline for visualising results.

A standard gene variant nomenclature (http://www.hgvs.org/mutnomen) is maintained and versioned by the Human Genome Variation Society (HGVS) and its use is recommended as the primary guideline for determining variant nomenclature except as noted.

This compression process is transparent to the user in that a user only needs to specify a standard genetic variant file as input and the compression will be automatically performed before the compressed data is transferred to the server.The genomic features to be integrated with the genetic variants are selected from a Web interface that provides a list of the features available.

The local G-statistic included the value in the calculation at i. Assuming that Gi* d) is approximately normally distributed [12], the output of Gi* d) can be calculated as a standard normal variant with an associated probability from the z-score distribution [30].

The ICP provides an accurate alignment with O(n2) complexity in its standard variant.