The phrase "a standard assembly" is correct and usable in written English.
It can be used when referring to a typical or commonly accepted configuration or setup of components, often in technical or manufacturing contexts.
Example: "The product is designed to fit into a standard assembly used in most modern vehicles."
Alternatives: "a typical assembly" or "a conventional assembly".
In addition, we generated a "standard" assembly using reads based only on the N2 parent, including 50× coverage from short-insert libraries, 30× from 3-kb libraries, and 20× from 6-kb libraries.
Collapsed loci could be identified in a standard assembly of an inbred individual by looking for regions that are highly "heterozygous," but these loci could not be corrected, and in individuals that cannot be inbred these cases cannot be distinguished from native levels of heterozygosity.
A single paired-end library was prepared on a pool of 15 BACs (equimolar concentrations) as described earlier in the text with the following modifications: 15 µg of DNA was fragmented using a Hydroshear with a standard assembly for 20 cycles at speed code 18, 6 10 kb fragments were extracted from the gel and GS-FLX library adaptors were ligated to the repaired/A-tailed fragments.
For cDNA assembly, a standard assembler program, Phrap [ 42], was used.
The thlOID promoter, containing the lac operator sequence was designed as a BB2 standard assembly part, containing the lac operator sequence and lacking the original RBS of the promoter sequence (The sequence of the thlOID promoter can be found in Additional file 1).
Constructing contigs of short to medium RNAs requires a different approach from standard assembly protocols.
Our design parameters were (1) the technique should be compatible with the RFC10 standard assembly and (2) the assembled product should be indistinguishable from one obtained through 3A assembly.
All of the 38,673 traces from all 17 BACs were then combined into a single assembly using both standard assembly parameters as well as various other parameter sets.
This modular design allowed the standard assembly of a series of scaffoldin proteins with various numbers of cohesin modules and the reconstruction of the full length cipA [CipABB2, Genbank KC560745].
A comparison of the Velvet-Oases, Trinity, and TopHat-Cufflinks assemblers was performed using standard assembly statistics.
The discussions were followed by an introduction to the Biobrick standard assembly scheme as the foundation of synthetic biology and the Registry of Standard Biological Parts, a community resource maintained at MIT in which developed or developing parts are listed (http://partsregistry.org/Main_Page).org/Main_Page
