The phrase "a specific alignment of" is correct and usable in written English.
It can be used when discussing the arrangement or positioning of elements in a particular way, often in contexts like design, strategy, or scientific analysis.
Example: "The success of the project depended on a specific alignment of resources and personnel to achieve the desired outcomes."
Alternatives: "a precise arrangement of" or "a particular configuration of".
PhyloP score is a measurement of the conservation or divergence of a specific alignment position (high positive values point out purifying selection while negative scores indicate acceleration).
Thus, we conclude that heterotachy is a strong feature of the data and is not a feature of a specific alignment method.
Alignment positions may be impossible to homologise unambiguously, but if several hypotheses about their homology result in the same groupings in a phylogenetic tree, these groups can be considered supported independently of a specific alignment applied.
Consensus sequences based on the fraction and frequency of residues at a specific alignment position within pmoC from all sequences were used to generate the tree.
In the proposed model of specific alignment of bands in rutile and anatase shown in Fig. 5b, the electrons are injected from rutile to anatase participating in more active oxidation reaction at the anatase grain surface.
The extent and handedness of the ellipticity signal did not change upon rotating the sample holder to different angles indicating that there is no angle dependence or specific alignment of the fluorenyl groups but instead the chirality is homogenously present in supramolecular structures.
In particular geometry of (4 4 1) and (1 1 4) resonators are optimized for specific alignments of the cantilever.
On that account, gene family specific alignments of the protein sequences of all candidate euglossine and other known hymenopteran proteins of the same gene family (see Additional file 1: Table S3 for details) were produced using MAFFT v7.031b [ 105, 106] applying the L-INS-I algorithm with the --maxiterate optoon set to 1000 [ 107].
These elements are generally masked in large-scale assembly processes to avoid non-specific alignment of the reads.
Fig. 4 presents the inter-specific alignment of the nt sequences corresponding to this segment.
