The phrase "a single alignment of" is correct and usable in written English.
It can be used when referring to one specific arrangement or positioning of elements, often in contexts like data, design, or organization.
Example: "The project requires a single alignment of all components to ensure optimal performance."
Alternatives: "one arrangement of" or "a solitary alignment of".
After cleaning up the nucleotide alignments for poorly aligned regions, the 1,486 multiple alignments were concatenated in a single alignment of 431,655 codons.
By decreasing the gap penalty between the two haplotypes, we created a single alignment of the reference region around gene GB45615 that included the reads formerly aligned to GB49510 to analyze the insertions and deletions.
These were then concatenated into a single alignment of presumed neutrally evolving sequence.
A tree based on a single alignment of the putative Sir2 catalytic domains of the Neurospora and human sirtuins (Sir2 homologues) is shown in Figure 1A.
The gene segment alignments were manually concatenated to generate a single alignment of complete genome sequences, and duplicate genomes (having 100% nucleotide identity) were removed.
Resulting alignments were then concatenated in a single alignment of 46,607 residues, in which missing proteins in some orthogroup alignments were replaced by tracks of gaps.
As the pits in a single alignment on both sides of the indentation show equivalent asymmetry, they must represent the surface intersection of asymmetrically shaped dislocation loops.
If a gene happened to be used in more than one source tree dataset, we superimposed the alignments on the different taxon sets to produce a single alignment on the union of these source tree taxon datasets.
A set of single copy gene families present in all genomes were then selected and aligned using MUSCLE [46], and concatenated into a single alignment consisting of a total of 196,481 amino acid positions (476 genes/ORFs, see Table S4).
We find that (i) of the algorithms tested, while none appear to be both highly reproducible and accurate, ZNMI is one of the most accurate by far and (ii) while users should be wary of predictions drawn from a single alignment, considering an ensemble of sub-alignments can help to determine both highly accurate and reproducible couplings.
While such previously characterized inversions are large enough to be identified as a single alignment or a string of local alignments, the impact of ultramicro inversions, which are such short that the local alignments completely cover them, on evolution is still uncertain.
