Sentence examples for a significant alignment was from inspiring English sources

In addition, the identity percentage cutoff for a significant alignment was set to be 100 for the last cycle and 95 for all other cycles of Megablast [ 32].

The protein space can be visualized as a graph-like structure, where nodes represent proteins and a significant alignment is saved as an edge between two nodes.

Using the blastn algorithm of BLAST+ 2.2.30 [ 36, 37] and the command line options -db nt, -max_target_seqs 1, -outfmt "6 qseqid sseqid staxids sscinames pident length mismatch gapopen value", each DNA and RNA contig was aligned to the NCBI non-redundant nucleotide database and the most significant alignment was returned.

Notably, for all examined genomes at least one significant alignment was found, which is not expected for the Gram-positive genomes.

The most significant alignment was then removed, and the second most significant alignment was combined with the remaining query-template alignments in order to generate a multiple sequence alignment using the same algorithm.

By contrast, no significant alignment was found in SustainPineDB for 5294 of the microarray spots.

Alignment is crucial for the detection of selective pressure variation in sequences, therefore we ensured the most statistically significant alignment was used for each protein family in the analysis.

For most of the proteins that are indicated to be specific for different subgroups within ε-proteobacteria, all significant alignments were from the indicated groups.

The one exception is TFAM, where the most significant alignment is to a predicted gene product in Tribolium castaneum of the general class of transcription factors which includes TFAM.

Contigs with significant alignment were selected for further analysis.

Even if no significant alignment is possible, the program can resolve the taxonomy of any query using IMMs.