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Pairs of contigs sharing a significant alignment of at least 80 nt (corresponding to the first quartile of exon length distribution in G. aculeatus, according to UCSC Genome Browser exon information data, i.e., 75% of exons are longer than 80 nt), with a similarity of at least 70% were considered for discrimination among alternative transcripts and duplicated loci.
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All sequences that exhibit a significant alignment (E-value of ≤ 7 × 10-13) withethe consensus were retrieved from Unigene http://www.ncbi.nlm.nih.gov/UniGene/UGOrg.cgi TAXID=3635 in the Cotton Genome Database http://cottondb.org/cdbhome.html.html
Second, the argument that selection for VAB drove eye regression hinges on there being significant alignment of QTL for the two traits.
However, this interpretation is less probable, since the significant alignment of neurobiological and cognitive-behavioral data at post-test occurred for the intervention group only.
Comparisons of S. stercoralis (a parasite of humans) L1- and iL3-specific or -biased genes with C. elegans dauer or non-dauer-specific or -biased genes showed greater significant alignment of the S. stercoralis L1 and C. elegans non-dauer genes (but not other combinations) than expected by chance [ 17].
24 An unexpected effect is detected in the H NMR spectra of H2@C70 at temperatures below ∼10 K. Changes in the lineshape indicate significant alignment of the C70 long axes along the magnetic field, indicating that either the C70 molecules rotate on their crystal lattice points to align along the magnetic field, or possibly that entire domains or crystallites reorient with the field.
These regions were removed using the Genome Browser's chainSelf track of significant alignments of a genome with itself.
BLAST search returns many significant alignments of this tRNA with that of other arthropods, including mites (Additional file 5, 62-65).
BLAST analysis revealed no significant alignments of this peptide with the GenBank human protein sequences (data not shown).
In total, significant alignments of greater than 800 bp were obtained at ten locations along the genomic segment.
Moreover, no significant alignments of the 7 TRs sequences with available S. agalactiae genomic sequences were found when a Blast analysis was performed.
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