Here we suppose that C is a set of predicted clusters of proteins by a protein complex prediction algorithm and K is a set of known complexes.
DOI: http://dx.doi.org/10.7554/eLife.01256.009 To assess both false negative and false positive rates for predictions by the DT2F classifier, we chose a set of predicted, unconfirmed MAE genes expressed in both assessed clones, and a comparable random set of predicted biallelic genes (see 'Method note 2').
A multi objective optimization is also done to find the optimum value of MRR and surface roughness for a set of predicted value of input process parameters.
This generates a set of predicted secular variation and secular acceleration coefficients, which are added back to the main field coefficients to give the prediction of the main field for the following month.
In many technical fields, it is common that the output variable (Y) exists with a set of predicted variables or the input variables ((X_{1},X_{2}, X_{3}, ldots X_{k} )).
A fundamental question was how to set the cutoff score value in order to define a set of predicted novel binders depleted in false positives.
Finally, applying Oct4 and Sox2 knockdowns induced by shRNA in mES cells, Walker et al. reported a set of predicted targets of pluripotency [18].
At each time-point, a set of predicted mRNA targets was identified for each miRNA significantly up- or downregulated above 1.5 fold.
This is an ancient common feature of the super-group of NCLDV, including phycodnaviruses, which retain a set of predicted functions that presumably assure their life-cycles in the host cytoplasm.
Moreover, most of the genes in this cluster interact with a set of predicted substrates that also include polarity- and cell-cycle-associated genes such as CDC5 (SGDID∶S000004603), LTE1 (SGDID∶S000000022), AXL2 (SGDID∶S000001402), and MSB1 (SGDID∶S000005714) (highlighted in Figure 4).
