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For this reason, a set of invariable operating prin-ciples governing the running of the system must be specified.
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The invariable presence of a set of IS fragments with differing lengths in each S. aureus type, offers an opportunity for simple strain-level typing for this micro-organism.
The number of rate categories for the gamma distribution was set at four, with an allowance for a proportion of invariable sites.
The phylogenetic trees of eukaryotic HECTs were inferred from both ML and Bayesian inference (BI) analyses, using the LG evolutionary model with a discrete gamma distribution of among-site variation rates (four categories) and a proportion of invariable sites, which constituted the best model for this data set, according to Prottest (Abascal et al. 2005).
The same three data sets were also tested by Bayesian Inference, carried out under a proportion of invariable sites and gamma-distributed rate heterogeneity among sites with a mixed amino acid replacement model using MrBAYES v3.2.2 [ 147].
In the years that followed the success of "The Gnostic Gospels," Elaine Pagels seemed to lead a life of invariable good fortune.
The General Time Reversible (GTR) + Invariable sites (I) model with gamma-distributed rate variation across sites and a proportion of invariable sites was specifically used with other parameters kept at default.
The GTR (General Time Reversible)+I (Invariable sites) model with gamma-distributed rate variation across sites and a proportion of invariable sites, was specifically used and other parameters were kept as default.
For each of the four test sequence sets MODELTEST 3.7 [27] favoured the general time-reversible model [28] with gamma-distributed rate variation [29] and a proportion of invariable sites (GTR+I+G) and the Hasegawa, Kishina, Yano model (HKY+I+G) [30] using both the Akaike information criterion (AIC) and likelihood ratio test [31].
Data were partitioned by codon position and gamma distribution of rate variation with a proportion of invariable sites was used.
The GTR model of sequence evolution was used, allowing for among-site rate variation and a proportion of invariable sites.
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